Scaffold JGI25908J49247_10007916

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10007916
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3353
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010161	Metagenome	307	N
F016812	Metagenome	244	Y
F043402	Metagenome	156	Y
F045758	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100079161	F016812	AGGA	MSTLYPELIEEEDEATFSSNLFKLYKLDERCGKLEAPSFRVLYLKDKKTQIHISNHFNSPTCIISYYNIKDKSCVDARIISKRLYNKIHDHYFEVKKKIF*
JGI25908J49247_100079163	F043402	GAG	MKEKFLQLSDSLNEIESDNIITLLTNLLEAWEDDKIDLSTTIEDFELTTIYKVLNLXTDEREDSSASTNS*
JGI25908J49247_100079167	F010161	N/A	MKRYSNLEYLSFKGDNMTRKNKMLYDALIDYVSYFYNCSNMPDSAKLNALKVFEALQDEKIDVNDFIPVMRQIQFSLDLLAA*
JGI25908J49247_100079168	F045758	N/A	VEEFFSLLYNQKIHPSFKVFSDLSINFICLEGMSVYCLELEGXIYFKLCFTDAPFLXYKFNKENDCENVWCLDFELYKAALRSCVKAVDKKYIPVKDKNEKIF*