Scaffold JGI25908J49247_10007176

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10007176
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3526
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034068	Metagenome / Metatranscriptome	175	Y
F047485	Metagenome	149	N
F055720	Metagenome / Metatranscriptome	138	N
F056318	Metagenome	137	Y
F067414	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100071761	F055720	AGGAG	MNTTLILSTNASGSTFTLDVDLRYTSKAFPALSRIQRALDKFLTNNSHWLAEDEPQIVAVVQSDSKLNVKYASGLSLTKIDPLYV*
JGI25908J49247_100071764	F047485	AGGAG	MQGLDNHFSALWVANERREAEGTPTAKYTITVAVEGFVQIDVEATSRSKAVDQAMEIFNDSSINIVVTEKSVADVEKWK*
JGI25908J49247_100071766	F067414	AGGAGG	MTDQERIVYLRSALKNLTESADRYIDDGSWIEHLSLDVEFAKGVLKSTRIKKESKNEPHTMAKN*
JGI25908J49247_100071767	F056318	GGAG	MFKHISPHPWTAGKLTVWSYPHEGGKNIVANCGNRNIPTATQRANARLIAIAPQMYEIIQKMQSEDAKALVRYMEKETDYADQGN*
JGI25908J49247_100071768	F034068	AGGAG	MQIKAIKRERDIDYERLYQAYEGLIDWIGKNEVDGQETLGLLVKAAISLAVTNNLPKEDILEVVSVTYEMERSMRPTSNEVH*