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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003277 Open in IMG/M |
| Scaffold ID | JGI25908J49247_10006408 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3746 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002268 | Metagenome / Metatranscriptome | 576 | Y |
| F014503 | Metagenome / Metatranscriptome | 262 | Y |
| F019433 | Metagenome | 229 | Y |
| F019830 | Metagenome | 227 | Y |
| F028512 | Metagenome / Metatranscriptome | 191 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25908J49247_1000640810 | F002268 | GAGG | MATLKIQAGIPTLYWKFNMASETGITGFIEIFEGRLNKMKLHLKEELSKTKHDRDRKAIRKITADARKLNKTLKEMRNATTKLCPHCGEKL* |
| JGI25908J49247_100064082 | F019433 | N/A | MVMAKTRLGTIDQVLSTRVRAVFPYRVNFDQITHAQVEEMAVWCINNCRGLWREEHYHALYFQFEDDYDAMMFMLKFGGRGNV* |
| JGI25908J49247_100064085 | F014503 | AGGA | VKVSVHYWKFEDGKTPPNAGHPIKELILDPPPRGWYCWVYPKDDRAFEEWMTRICPTADMCHRFNSGDPMWTVYIKDDVEATMFRLMWM* |
| JGI25908J49247_100064087 | F019830 | AGGA | MSKRIGPITLDGETADRITLLNLKEYRSYLTKELAAWRKNPRTEDNLDGVWLHPEDVTGNTVTINALNLLIKHFGD* |
| JGI25908J49247_100064088 | F028512 | GGAG | MNEELKAIAVAAGAPDEVLNTLWFNIFCQKFAHLLVEELEKEGS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |