NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10006017

Scaffold JGI25908J49247_10006017


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10006017 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3865
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009073Metagenome / Metatranscriptome323Y
F017129Metagenome / Metatranscriptome242Y
F024306Metagenome206Y
F039625Metagenome163Y
F053303Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100060171F017129N/AMRTMYNNPNDIQAFEALESERATIELDPQYQQWVAELNVSQSYVDPEGTIKAKLLNDQYSFSTSEPKSSILNFLKLKGIWS*
JGI25908J49247_1000601711F024306N/ATESVKINSILGEYPVVMGEYPKKYHSEIKRELAGAGFGSVSNYLVK*
JGI25908J49247_100060176F053303N/AMSNLKIQIKGTIYQITEKAFRSTDYWQKPITPYFYASYVAAGQLVKQWANKNYPGIVCRVKGSSFANGNSMDVRVCMPDGSPIPDADYRAISSFAKQFEYGKYDGMHDTYESYTTSGLITDNGTVIQAGVKYVSVDNRPSFGTIEWARWELSTGREYKDLSXYCDTKILDKALGL*
JGI25908J49247_100060177F039625N/AMTLSHLKTTISQLSSLSVSELRSLNEAVVDMIKHKRNMESTLKKVGLSVGMSVRVNHPRLAGRELIVNKISRTKATLSLNGGAVYTVPISLIEY*
JGI25908J49247_100060179F009073N/AMKNYQILLTAIGSFFVGVSILNGTAQQYVYFAGPMNELGCATIALTMGVLSTFAIDWKGFLNYLNK*
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