Scaffold JGI25908J49247_10003843

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10003843
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4807
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F020860	Metagenome / Metatranscriptome	221	N
F022820	Metagenome / Metatranscriptome	212	Y
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000384312	F022820	N/A	MKHENRISKILEKKILKDEDPKLIYEIERYLAGLEIHYSKWAKAHPNWKQLEE*
JGI25908J49247_100038432	F020860	N/A	MDKITKIKKLAEGGYAIYAVDPKTKSEMQVGYIGDGLDLKGWLPEGVKIENS*
JGI25908J49247_100038434	F010746	GGAGG	MTYKCSVSGEAISPERVEALQVLGVPESKWTNIKHSQVKKLRGVYAGDDGSSDIVICDAVDGGSLFDNSVVMEVENEC*
JGI25908J49247_100038435	F035200	GGAGG	MNAKYIVLRDGIRVSYDMHNSQAEAEVEANHWRAIIKRWPDGTKVVIKKIGE*
JGI25908J49247_100038439	F007359	N/A	MTLIKQNLGAHWVIGMKGKVEDIEQFHNRIYNWGGTNGSIQWMSESFGYFWITMEKLERVMFKYMLNGMSDKLGKKFRGKKGGMKAVAMHRMKTAIANIPVETFMHTAETQDFYSIGTISAEKLDTDS*