Scaffold JGI25908J49247_10003697

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10003697
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4883
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028157	Metagenome	192	Y
F041769	Metagenome	159	Y
F051124	Metagenome	144	Y
F085645	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100036971	F041769	N/A	PDALRLMHDEAQTRIAELSTALSIVTDQRNNLEDSLQAAMKELFHKDTQISQLNSTVERLRVHIAQGIEL*
JGI25908J49247_100036972	F085645	AGGA	VKGAEILTEAHDLITGPRQXAYXHPFDDYGKVTRIFYGMTGINLGIKQAILFMVAVKLARLTTNMDEGRWHRDSVVDAAGYLGCLNMVHEHIQDLHDNAVTRFKDVP*
JGI25908J49247_100036973	F028157	AGGA	MNIDALTPQFITVMADHDGHARWIATLDCTDVMNAYRTRGLYLLVTLNAEGEATVAFKPGNDWSTTWSPPVTVERR*
JGI25908J49247_100036974	F051124	N/A	MTKRTDAVEKYLNDIGEGWCIKYVLIAVVEDADADQSFYIQCLEDQSAAETIGLCEAVSHIQKAKIAKAWMDREAEEEE*