Scaffold JGI25908J49247_10003127

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10003127
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5273
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005633	Metagenome / Metatranscriptome	394	Y
F007260	Metagenome / Metatranscriptome	354	N
F017997	Metagenome / Metatranscriptome	237	Y
F031459	Metagenome / Metatranscriptome	182	N
F049590	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100031271	F049590	N/A	MTPTVTVDTSRFDEAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSCVTKA
JGI25908J49247_1000312712	F005633	N/A	MRIATTIAVDKTGKTKLLAGPEIDATLQRTNFNTVSVPEGGKLILWVQGALAPKIRKG*
JGI25908J49247_100031272	F007260	N/A	MSVLQSAMGNPSFLWQGVLVRCLPAAISDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSNGDRLLQESGSFLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK*
JGI25908J49247_100031274	F017997	N/A	VNFIEQIVTALLKWLTSFVQTPPTVEDAKRDPDLKKKLLDRIAESDR*
JGI25908J49247_100031276	F031459	N/A	MQTDTNNSSGVGISLATAAAAGAVSFIPQLTQWFQLGAAVLAFIAASIGLYKTFKK*
JGI25908J49247_100031277	F001272	N/A	MEITVKLTQEQASGLLQLIDIAVKAGGIQNAKVALPLVDLIVNAAQPKSE*