Scaffold JGI25908J49247_10003027

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10003027
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5361
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F008494	Metagenome / Metatranscriptome	332	N
F009750	Metagenome	313	Y
F010398	Metagenome	304	Y
F011760	Metagenome	287	Y
F013084	Metagenome	274	Y
F018927	Metagenome	232	Y
F071169	Metagenome	122	N
F076096	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100030271	F009750	GAG	MILKNAIFEPSHTMKEIVTAIYQNGEFTDNNILKPHLTDRIGIRMKFPEGAGCILWTNGKKYYAVCEAFGTVFTINIPRNIGDDIWDRFKTYYEGNYSYKPF*
JGI25908J49247_1000302710	F006220	GAGG	MKKFKKFIEELAIASGTEMMRASQMRPSTFKDKSKYSRKQKHKKGSENE*
JGI25908J49247_1000302711	F071169	AGG	MSSIEVQVNVEELDVVRRKLSFQLNKDLTSEETVKFLIEREFNIAKKIPLAKKSPNRAEKSDIKECIYNGSTSGEAMKKLNVSRSTFFRHKAKERKLLEESE*
JGI25908J49247_1000302714	F076096	AGG	MVCYNTEWENPLYWFDKLLTYTEHAELRMIERDLPLVDFLPLXSKFLYRTLKRDVYSMTFETVVNHKRMEIAINSLGYVMTVYPVLITKADKFQYKYKQYLGAFKQPDDYCPPVISDFNFLEGTI*
JGI25908J49247_1000302715	F004583	AGGAGG	MKTTRNSYRLREILFCTRNQIVSLKDIQMDMLRIDSKVANQIATQISALEEVYKHQLSLVTQAESVEPKRDGWF
JGI25908J49247_100030272	F008494	AGGAG	MTKKEVINLFMSAVGQYTSAIDKTAESNIQFKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIVAKREAEYLLETARANESRIKAEVDQMKYIIRALEAKEEA*
JGI25908J49247_100030273	F010398	AGGAG	MEISIQGVTKVNYELVIDEDVFNEACEEAGLDPANFKKFTKDDWDELNPHLVQAVVDNESDIDYTEIHVETSVFADTLTIDDSDNVTTVYYDKNRKADSVEIQ*
JGI25908J49247_100030274	F011760	GGA	MRVRLEDVSDRSSCIGYVGQGTWFDGKSFIVTQYKANPSSFYFFVYNDFVPDYNYFNSMNSGFGNEIYQLNPDNGNFSGKTYIYSSKLDKMFEPYAITPVVESPTFLFEIR*
JGI25908J49247_100030277	F018927	GAG	MYTHIVISRHLAVDGTTTFYVIEKSKNSSSIIWNGTNKQAAYQVAYRNARKENLPLYDTQYRPEVDKNGVKHIIPIGNELLEVNN*
JGI25908J49247_100030278	F013084	N/A	MGIMNALELMAEAKETAIYRGHNVKYWNVLGGDCYSLECKDCKMSVMVKENPLPNEINVGGEAVALNCVKPVKEKKLRKK*
JGI25908J49247_100030279	F007310	N/A	MRTVLWNNTERWFNHHHYELLIEDVTGFDLKKSLCEESVKYMAKRLSETKYQRRFKTLYTIYENEYNALVEKFNNQAENNGNIEVA*