Scaffold JGI25908J49247_10002621

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10002621
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5749
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003422	Metagenome / Metatranscriptome	487	Y
F004051	Metagenome / Metatranscriptome	455	Y
F043940	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100026211	F002245	N/A	SNNERLQMSNLIKVPHSVVFEAIIDLDKIPAKLLPALLKLNETELLAMCKDATVSAIGDSKFLQIANENNTWAEVFIKEGN*
JGI25908J49247_1000262110	F001043	AGGAG	MSDYKDGWDDGYKFAREEIMEKLSEIDINDIDSWILDRLSEMIEGGKL*
JGI25908J49247_1000262112	F001125	AGGCGG	MGDRANFGFRDSKENVVFLYGHWAGHNMLAKLANAVQAAEPRWQDESYATRIAISNLIGEDWTEKTGWGIYINQLGDNEHKVPVIDWSNQTFTLYEEDLSTVVFTLSLAAFVDKYSRLVMV*
JGI25908J49247_100026213	F004051	GAGG	MTIDNQLYQVGDLFTTLKSKKTGVIKEIHPQPSGSVRVLLEMPTKETRWTSVSAQTLLGV
JGI25908J49247_100026215	F043940	AGG	MKNRFRVEIYDENKLNDLTIYSEQGVDKEYLTELVFSNRRNFFGNVRAYVYDTLKKTKTTALYLPSEIVNFNRNNQLTRDELGL*
JGI25908J49247_100026218	F003422	GGA	MSVGSCIILFMTNETISSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPTNQTKEEKMETTETTVPDTYNPNLLVTYKVIRGYSDAEYATDKVVNIEWDLHNGRTNSKLIQTLNSKVNSVKDIITEAYADSDDQETLRAIAEALGIELTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVESQNGNIEVGDVEVTNVREN*
JGI25908J49247_100026219	F000311	GAG	MYFELTAPNRLSMEMAYWDAQIMGLDPEAMSALTFNIGTGSIEKVSRLRDKYNLTESYVSEYETTGY*