Scaffold JGI25908J49247_10002545

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10002545
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5829
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F004955	Metagenome	417	Y
F024977	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000254511	F024977	AGGAG	MTEFMQPINPIRITTGSDEWSFKTPVFALALQNEKVTYLTINGNFYRPDQIKFAEMNINGQWVALESHHHRQAKHESPSTD*
JGI25908J49247_100025453	F004955	GGA	MTFNPSKALIALVGLICMTVLIAVGQIDQDQGLPIITMIVGYSVGNGMAALTNKPVEPIIKKKIQ*
JGI25908J49247_100025457	F001332	AGGA	MIDKIQEMTRAVTKAEIAMKAAQWQIERLNDDVGMLRKALFELAYVAEENGIYLSNLTKSTQDTIVAMRLGGFK*