Scaffold JGI25908J49247_10002390

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10002390
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6000
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012774	Metagenome / Metatranscriptome	277	Y
F012978	Metagenome / Metatranscriptome	275	Y
F013085	Metagenome	274	Y
F016809	Metagenome / Metatranscriptome	244	Y
F041601	Metagenome / Metatranscriptome	159	Y
F062761	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000239010	F013085	N/A	MDILSEIIEASNEMIDALEETDFFVETPFVDRIPLKRALQIAMQRKWEQEDDMFLNDEEFLEVCKSVSNKSIGKTIENLVDRGALNMSVNEDGEILYSANKDFQFDKYEDEDEIQ*
JGI25908J49247_1000239011	F016809	N/A	MSKINEEFMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWKWRNVQSHSIFPDEVQYDDEYYKSSYLPTPDEEVENYKQTKQNGHT*
JGI25908J49247_100023902	F041601	N/A	MKQQILKLVNRIKEDLKAIDKDGVSHPLIDNVYETLELIEDEIYEDDAQADALSFEDEDY
JGI25908J49247_100023903	F012774	N/A	MEPIILHIDLGNQSLTSWLSENKYIVYSELIRYCDKLLKDNLKEVQAIMVSNLSDNIVFIIKRDNVKLTLDKAMDFFMDIEEYEKCAEIRNLYILIENLKNETTDTKISKSNQRGLKSNR
JGI25908J49247_100023907	F062761	N/A	MGFNHCYLTSIENLQTHLDNVGLEKFIKMYRSYDALTGPSECFEFIEQKIEENEKVIRNINNIDLF*
JGI25908J49247_100023909	F012978	N/A	MKMKFNKTDDELKHMSEDELFEYLDAKTLHLKQHTSPLSSYKTKKFASIGAAISNTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE*