Scaffold JGI25908J49247_10002329

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10002329
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6065
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F012771	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100023291	F012771	N/A	MKEHKPKRLTAKILVVSDDTHKRLKEYAQKKGYKLQYVADEAVCEYLEGKESNEQKTN*
JGI25908J49247_1000232910	F002227	N/A	MKLTIQSRDNAQTVVDLFNAIVTGEVEEQGATPLSIYDDDKHICSLTDKDGHQILELIIEREVGDKLCPGTPNSETV*
JGI25908J49247_100023292	F003748	N/A	MFKVNRKDAGGSYINAEGEYIVTITKVEETLDAKGREVCKVTFATEDGSSIVDRFINQENVWFRVNQLVAATNHNVPDGTEVDFLGVKGSYANFLKSMIGLELAITVRSREYEQNGETKTAYDVKSMKAVSPTASDSDEEKPF*
JGI25908J49247_100023298	F001964	GGAGG	MIRNQFAPPKFKVQLVGSIGWSDLKERVISHRMVEFDTRKEAEKAAKELNPGEYAQGRIRVVPTTWPEDYDVYPVVERVSEKPKSSS*