Scaffold JGI25908J49247

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10001956 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003277 Open in IMG/M

Scaffold ID

JGI25908J49247_10001956 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6607
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6607

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001322	Metagenome	722	Y
F005585	Metagenome / Metatranscriptome	395	Y
F014016	Metagenome / Metatranscriptome	266	N
F014613	Metagenome / Metatranscriptome	261	Y
F031093	Metagenome / Metatranscriptome	183	N
F056572	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100019561	F056572	GAG	MSNYLDDYVSVQXRXKEFINAYPDYRIKTHILAESLVNTCDVYIIKTELYRTEADANPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKVNQGPKKPIETTKPALAE
JGI25908J49247_1000195611	F001322	GGCGG	MTAWSPVYRVKVNGSTVTSATLSGLTITSGRDDIYQQPLAGYCSLTLIETAEASVPFEINDAVTIEVQNTSAVYVNLFGGFITDLGITVQTSGSTATSQKIQITAVGALARLNRAVYIGNFAHQFDGDRILELLETVLFDQWNEVPAAETWNGYDPTTQWQDAENSGLGEIDTPGDYELHSENGLDDTVYSLASRFATSGLGYLYEDSQGRIGYADSTHRSQYLAINGYVDLDGNHAIGPALSILKRAGDVRNLITINYGTSGAEVTDEDAASISDYGLLASTISTTLRNQGDAEAQAAFYLLIRAYPQFALRQITFPLASGEIDNSDRDNLLGVFMGQPLNIVNLPANMVGGEFQGFVEGWTWTASLNQLNLTLNVSPIAFSLQAFRWNSVPATETWNTISPTLDWLNATIVA*
JGI25908J49247_100019562	F005585	N/A	MNGLKKLETHYSTGASSMATRGTIYYAFTKSVKHSVFSSETHLTWQLLLSRPSSQEWWRVQSAKIRISISLDTPLSWVDYDFQHQKIGTTLSLTRNHNSNQYCDLCKYRWGQNKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADDVQNWPDGTFYSLKEQLEDAINDFAGREXLDVQLP*
JGI25908J49247_100019563	F014613	GAG	MLPNLSDEAVVGIIIGVPFIGLYLWGLITSAKAKAFNEGYKRGRSSVRYTEILK*
JGI25908J49247_100019564	F014016	GGA	MINKVTLIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVSADVA*
JGI25908J49247_100019567	F031093	N/A	MAATELATLVASVLGSIALLIAGLRYIIKLENIPIVSRLDKMESQLELALARGVRNGNAKARK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25908J49247_10001956

Overview

Ecosystem & Geography

Associated Families

Sequences