Scaffold JGI25908J49247_10001219

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10001219
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8154
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008752	Metagenome / Metatranscriptome	328	Y
F009137	Metagenome / Metatranscriptome	322	Y
F033792	Metagenome / Metatranscriptome	176	Y
F073147	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100012192	F009137	N/A	MDELNKFCENYEVRVLNDSKRRARYHPPRFFTDPSRADIIRHDVVEYETEQVYTVEIPEGRLRTLVEMERKFFNYINHRGKPIDMFQMLMDKEREEAHYRNTNAAVQKAYEQYSIMLNLAGYQKKF*
JGI25908J49247_100012194	F033792	N/A	VTVSGHDMSISDQHEHCIEDLYAKYLQFTAVMLEEYKDIEIAGVMITQALSMYRTVLPEEDYQRMVKSIYERRNDVKTLD*
JGI25908J49247_100012195	F008752	N/A	MKEEMMSKPWTELEPQTPAEGVLKRNNYGDAITYQVTCECHDANHDHNVWVEADDHRVTVTTYTTQKSQWWSLNRWQTIWILLTKGYIEYEANIIMTEQQALNYAETLKKAIQDVKNFKQP*
JGI25908J49247_100012197	F073147	AGGAG	MNFELYEVWAVDESGHEELVETTSSRKEALEIAEANLGLGVMEAIVYQEDEHGDLHEIKRFGHG*