NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25908J49247_10001123

Scaffold JGI25908J49247_10001123


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10001123 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8460
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F001515Metagenome / Metatranscriptome679Y
F001531Metagenome / Metatranscriptome676Y
F057906Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_1000112318F000368AGGMEALKQVALTWFRAAASAAIALYLAGETNFKTLGMAALAGFLGPVLKWLDPSAKEFGRGAE*
JGI25908J49247_100011236F057906GGAGGMITYNLNTEDVSNLIKAHLCDDLKITNIFDYAIISSVSDKLYGMVRAYPEGKIVITKDDADKILTQAKDLESTPLFISVTSDGVFQYDLSLSKLKFENYVDHSAGIDTDVADLDISNGTQILEWYPEFASEDDYVDALMSRELAWLGSDESESW*
JGI25908J49247_100011237F001531GAGMDWSRIERWEYVVTAVASEYSKKFTICEYEDIKQALYQWFAEHPNKLDTWEAIGEKDAKNLIYRSLRNEALDYCQRWKAKTVGYDVSDLYYYEPGLVEVLLPAVLMGNFHIAPKLNLSGGGKPSAPAEGGNIQVMLLEVDSAYWKLSKDDRKLLFFRHAESLDFKEIANFLSLGTEDAARMRHKRAIKRLVNKLGGYRPYHDEDIKDATETEEIPDSQE*
JGI25908J49247_100011238F001515N/AMVKNSSFDLDFGYGRKGETLVEELLTGGRTVEVKRDRKWWITNNLYIEVECWFNKSKAWEPSGLSVTEAAYWAFVLEQSTVIVPTHILKKGVLELGREISCEVPPNKSKGYLITVEDLLTMTRKYKNEKVDNGLE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.