Scaffold JGI25908J49247_10000998

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000998
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8878
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F001688	Metagenome / Metatranscriptome	651	Y
F050221	Metagenome	145	Y
F079971	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000099810	F050221	GGA	MSNFKTWTQENLAAFAQAASDKMIQQDDRIQQLQCDLKDAIAAYRALMKKGESPPDQ*
JGI25908J49247_1000099813	F000220	GAG	MSAEQLSLVDKVLAYVSSPFRLFAMVLMAVLTFAGYFVYTNQELLIGAYKESKKIPSIAEDRVEDAAAHLFKQSGALVVAVFKVNSMFGTRVLYRAYGKNGRDKTNDGLDVGLFTQNAANNADVVKLMANEIPCSDYKSAQSEMGLWYIAKGVAYTCRISVPPEPGRFVGQITVGWATQPEDMDSTRAMLQIAATMLSRSKQ*
JGI25908J49247_100009984	F001688	AGGA	MFRYIWTELRTMLKTVTPAQAVAHELIHAEHALLQAETGVEYAQALVTYNKNRIKRLKAYLGKTEETT*
JGI25908J49247_100009986	F079971	GAGG	MNEEVRKVKPYPAVPADIDPVPDTWHTIGAWMLGGIMTVLAVICLGLFFTGLYIWSLLI*