Scaffold JGI25908J49247_10000921

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000921
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9227
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009749	Metagenome / Metatranscriptome	313	Y
F012868	Metagenome / Metatranscriptome	276	Y
F019433	Metagenome	229	Y
F023522	Metagenome	209	Y
F024537	Metagenome / Metatranscriptome	205	Y
F048947	Metagenome	147	Y
F064668	Metagenome / Metatranscriptome	128	N
F100345	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100009211	F009749	N/A	MYSWILIVAMYSPAGDFIGKDTMKFESQKACEAVKVQLPNLDHLMRVKHKGLCVTRDHWEGKKQMPGVAYD*
JGI25908J49247_1000092116	F100345	AGGAG	MSEHQRLVALLKGPDWYAHESGKDLLAVLNQGKRKRYKSMNSTADKHLSTIMYLFDKEQSVRILKTWLSTYSLPLDPDRLKTFDQFHEQFGKFITNNAGLIKSY*
JGI25908J49247_1000092117	F064668	AGTAG	MNITVYSRNRLYETFSKWDVPRDFADPMANYLVYGYEPGGFFTALLANDFFAAIQSSHPXNTVEALKCLVGWINDCMPPEAYSTYNRVSEWCRLPEGHRRAILEQYGLIHTEQEEIMLTLRSESTVEPVLY*
JGI25908J49247_1000092120	F012868	GAG	MKHYDYEWDLNPGGIILDPELNIDKLGWRHGDMFKVTNIDGRAMLVKLDPLVKFIEEGLRNETSNLE*
JGI25908J49247_100009213	F023522	GAGG	VIDPNPTPTILRAQRAEEHLKVDQRLMQLLDTYHVIVLRDEDFAEKLTWCLENCQSKFRDLSDPNGRAWYFQNEQDATMFAMKWA*
JGI25908J49247_100009215	F048947	AGG	MNSSQRRRGRREFRKLEHSILIDAKKYRDAGAWCLTQFGKRWQAIGDTDGAWTMFWAGRNDHDKYIFHFVEEQDKLMFILKWS*
JGI25908J49247_100009216	F024537	N/A	MKNLEKEILDELGTKMQSEIDREVMWGMLKSLGWRRVNLDRFTDXNHAVDITYWLAEHCKHAFERRGADFIFESEVDAVNFTLRWQ*
JGI25908J49247_100009218	F019433	N/A	MVTDKIKIGSLNEILATRVRTVYPYRVNFDNITRNQIEEMASWCINNCKDLWREEHYHALYFQFTDDYDAMMFMLKFGGRGNV*