Scaffold JGI25908J49247_10000873

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000873
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9422
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F006844	Metagenome / Metatranscriptome	363	Y
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F018929	Metagenome / Metatranscriptome	232	Y
F019320	Metagenome / Metatranscriptome	230	N
F019826	Metagenome / Metatranscriptome	227	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000087311	F019826	N/A	MGFMRRSIRLGISKEEKVAGRITTLLSDFTLDLEAIGFYLAKGSPHIIYSRANEVLEAMQYNKEVDQLDRGVYHDTR*
JGI25908J49247_1000087314	F018929	GGA	MTNEEIADLLNKASYKIWDTAKVMKNQDYHDGVVKGLKMASNIVSKL*
JGI25908J49247_1000087315	F011077	N/A	MMDTNLTWAEEDVNLWKGWTFSPEKNRYYFNDIGNESLAAFWADNFLNQAYE*
JGI25908J49247_1000087322	F017788	AGGA	MKKIIITSLLIALLIPNSSAQAATKSLNTKGNKSSCKNIKANYKSEVIANWSNGLASDQDVLKEIDLNINMLTAKQKPTTGKIKTTISSWITSEKNTQIAITDKNFEAITTAMNLKISSVTNFDKLCKSIEK*
JGI25908J49247_1000087324	F004475	GAGG	MTNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWKSKGLLKSRRTQKAFEASAAIARGQNEQING*
JGI25908J49247_100008737	F019320	GAG	LHTLHWIATKAKDRQEAFDIVTVSLMKNSDGNHMADWSDWHVVGGGRWSDSSYENSSDMIISYAEKPDEFKKTIEDIKRYRINYMNDKLIKLDTAFDNLKSDVVDYISNDCKLHDKRQFDFSRWEITEAINMLNSIWTCDSSFFDHNEFTSSLQYLEERLDKPEEAALQYLVPVDFHF*
JGI25908J49247_100008739	F006844	GGAG	LAKWEIEVIFEPTGTYMNFEYETDNEDEDSIFDEVANQLSIVPFLVEKNEEE*