NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10000602

Scaffold JGI25908J49247_10000602


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10000602 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11059
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (15.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F025233Metagenome / Metatranscriptome202Y
F047578Metagenome / Metatranscriptome149Y
F048842Metagenome / Metatranscriptome147Y
F060730Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_1000060212F000716N/AMEKLKKQVRDYQLYAGKTYVQYESDGYTAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQLTIRYSNLIFETLFPNSPMTQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFLDLKDAPVTLPRLKNEVKA*
JGI25908J49247_1000060225F025233N/AMHLVIANLMFVLQLHTGVIIPTDKVDGRTIYSIPSANIEYAYKAEIIQYLETGTFTYDETLEDPVDPSMVKN*
JGI25908J49247_100006023F048842N/AMKDRNWVVILPILFYVLAGFGYIRCAYKMFTCNWEPIGKAEVVYTIGTFSGAGVIIGYFDIEDK*
JGI25908J49247_100006025F060730N/AMGRMKEYYMEIMEANDGKVPEELTIADIARMKELRIFNWQEYEREQEKVRVFRVKQENPREITKIVQTREYWEEELRKGKIRKASKGLQ*
JGI25908J49247_100006027F047578GGAMKMICIDSSRKPSKVPVEQWIKEGEAYTVIKVVQMGLQDGKYGVLLKEVQMSADCFPYEYYDADRFIPLDIRVYEAQEKQEEVLEADLDLI*
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