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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003277 Open in IMG/M |
| Scaffold ID | JGI25908J49247_10000583 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11209 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001332 | Metagenome | 720 | Y |
| F006988 | Metagenome | 360 | Y |
| F088516 | Metagenome / Metatranscriptome | 109 | N |
| F104728 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25908J49247_1000058314 | F006988 | AGGA | VTIRPYTGLKDSVHARPRAGTKAFVDYCEFLFGVKCLGIFGDRNINASGMPNPPKSVHSTWRAFDLGAKSNARYKLIEFLYINRDILGVEAIHDYSNTFKPSRFGWGAAYKCDRDAWKIYEKNTIGSKNGQWVHVEISPLLADHPDIVAHAFETIFKGT* |
| JGI25908J49247_1000058317 | F001332 | AGGA | MNDQLNEMTKAITRADIAMKAAAWQLEAQRADIDMLRKCLFELAYTAEENGINLVNLTKTSQDTIVAMRLGGFK* |
| JGI25908J49247_100005832 | F088516 | AGGCGG | MATYKIIFAQLLDNYAVVQTLTNPEIQAGESITVASVSATFDGSQTVYAMPQYAFIGVDSDGDLLYNTSVPVPNQVLFYLAGDDIDRYAVXPQGTLTHTQTCTWIDGPAVATWLGIDLAGAEETAFLQQCASAACSFIFVRRQEAGYTDGLAVSPSTQVTLATTMYAGALFRQRGAVDQFASFDGMGNVPTTGLSPIIKQLAGIPRPAVA* |
| JGI25908J49247_100005837 | F104728 | AGCAG | MSGVQYKAEVIGIRDTVQMLKKTEPEIFKEFRSKAKFAVDPIVKDAQARLVAASGKEKAPLTGMKRKWAPGGRQIFPWNQQKAIKGVKVQVRPSKTAFLTVTQREIGPAVFDIAGRKNNSVFATNLNTYAQASRTMWPAAESKEDEVTKNLAELVDYVNEKTNKKLRF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |