Scaffold JGI25908J49247_10000306

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000306
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14701
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (79.49%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F012455	Metagenome / Metatranscriptome	280	Y
F014849	Metagenome / Metatranscriptome	259	Y
F015434	Metagenome / Metatranscriptome	254	Y
F023275	Metagenome / Metatranscriptome	210	Y
F034574	Metagenome / Metatranscriptome	174	Y
F047494	Metagenome	149	Y
F100416	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100003061	F004132	AGGA	MSEAMLQEQLSVPYNPNLLVTYKAIPDTYAAPESPTFMTDKVTQIEWDLHVGRTNAGIAANRSRDIAWLEDQIPEWYDPNYSKEEVLKALAHRFEINPMKQMSVYGTVTFSGTISIPLDEIEDFDLSSVTIDAEVSSYDYEADLTVDDVSLEEN*
JGI25908J49247_1000030610	F014849	GGA	VLTNLDLLAIIIALSGSMLVMFLFYKQNVAQDKEIRRLRNELRKALKV*
JGI25908J49247_1000030612	F005348	AGG	MISSVMTFLCDECNGAGYIFWGDNLDYDVEKCECKNFALGTLFTTKEND*
JGI25908J49247_1000030617	F012455	GGA	MFNEIKNKIIRIQELRRSNAATPIPNKKKYSRKVKHKNAK*
JGI25908J49247_1000030618	F047494	AGGA	MNSLKNKVCKHTANVLAISIVNDMKYTFCENCEQNIYSHYIEDNDIMSYWSSWKVGK*
JGI25908J49247_100003062	F000684	AGGA	MTLGGYTYQIGDLFTTSRTGITGRIVKFAPINSKLTRVSLQLANGAQRLAMVSTTK*
JGI25908J49247_1000030621	F034574	AGGAG	MKITYTIWQGSLNKGLLTAESMKEIIATMKDLNEGNTSSLKFEHMVHKIEQVA*
JGI25908J49247_1000030624	F023275	N/A	MAILDNLEASMADDDGMPSQKVTDAIKEMLEDPEHHKLMERLKYMEDHGI*
JGI25908J49247_1000030625	F015434	GGAGG	MESEINVPPYRHTPKGMSILNKKTKCCDACECGQSEEEKFNKLMETQSSFEE*
JGI25908J49247_100003066	F003393	GAGG	MIDLENDDTIQIVDYVKVDILTAGQLMVDDCILIGDEVVSIADIVSLPDGYTLEVVNDFGERETIQVGEYDQFDLMMLQ*
JGI25908J49247_100003068	F000808	GGA	MDNEYNYSLTTSYDGKLIHTLRVSDMLEAVNAWTKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK*
JGI25908J49247_100003069	F100416	AGAAGG	MGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN*