Scaffold JGI25908J49247_10000182

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000182
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18196
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (29.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012111	Metagenome	283	N
F015354	Metagenome / Metatranscriptome	255	Y
F021287	Metagenome / Metatranscriptome	219	Y
F082111	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100001821	F021287	N/A	MPNLTLITLTPPSLPIGYCPTNYQQLANDVISGTQATFNSTIGNSFFNFGASVPTLNNQVYPWLDNNGNWWVFQGGYWSRLNPVAANSSERRIFVGTSADVLSYDGGDGTVYSGNPYAGSMWAIDTNFEARFPVGAGTFAASGVVSVNGTTT
JGI25908J49247_1000018217	F082111	N/A	MEEPLNSPVVSNNQTPEFGSSFIDAFKAIGADNAAPADKAVTPAPQKTDNTPPKLSKSEMDIERMFGSKKTAAEPASPAPDDADIPETIKSTKAADAFRKIKEEKAQLAKQLDELKAGKSTNPEFESQLKTLQEERDALSERVRLLDIERHPDFIKKYEGKITGVFDSVKNLVGTDGERLVSLLKSPDSDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGERSSELTEAKADYDAVISKYKQDNEEGTKAALESANKTWQKVSTDARSLEIFEPRENDEEWNTELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYAQVEVNKRLQAELSKYRGSEPGVTSKATSGGYRPANANASKSEDFVASVMKSLGR*
JGI25908J49247_100001822	F012111	AGG	MSERAPRRYTDGSVTFEGGVDAGVMPSEVDKNQVAFAVNASFRQGFVSCRPGFVQKDYDLCVSITADNDQITADQTNVTADGWAEECYGPQSLAGTFQCALPYIADDGRTFILMLISGKVWLYNCLQNTAQNLSVSPSLENPSNLLDGWMVQAENFVVIQDGFSKPLIFNGTNLRRSSDDEIKTGKVMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDSSLGQGPLLVFTPRYVFSVQAPVDRDTWKNLSYPIQAISLLTSGALGSRSAITINGDVFYRAVDGVRSFIIARRSFTDWGNTPISSEILNVIENDQTNLLWASSAVVFDNRLLMTCQPRYNAEGVIHKALAVLDFDLITSMRKKFPPAWSGIWTGLNLLQIVKTENAYGDQCFCIARGSDDSIQLWEVTKGNKFDNNIPDGKKEIEWMVQTRAYNFEVPFGLKRLDSGDLFIDSLEGDVSFNVTYRPDQYPGWIEWTDFAECATTTQCLDLCPITNFKPQYRPKMRFPTPSDLPCNETISTPARNLYEVQVMLSIIGYCRIKSLRVHAYDVQEPSVGDCRTAFPACTPLDVCDINPLIYTSESVNP*
JGI25908J49247_1000018220	F015354	N/A	MNPNIASLIRHVLTAAGGFIVAKGLASADQVTEIVGAIVSIFGVAWSIINNKKNASKTE*