Scaffold JGI25908J49247_10000161

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000161
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19195
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (62.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F002268	Metagenome / Metatranscriptome	576	Y
F007163	Metagenome / Metatranscriptome	356	Y
F009334	Metagenome / Metatranscriptome	319	Y
F011276	Metagenome	292	Y
F073563	Metagenome / Metatranscriptome	120	Y
F075746	Metagenome	118	Y
F095464	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000016117	F073563	AGGAG	MESKHLYTIRWTQPYATYQMRPYLRHLRNEYEIQIEAKLGRGEFNDAKVVLERIMQL*
JGI25908J49247_1000016119	F001008	AGGA	MSKAKHKPYQWIDGETADRITSMNLKDYRAYLKKELKLWKKNPKSDANPGGYWLHPEDVGLNMQTIAALDLIISHFPETPDEIK*
JGI25908J49247_1000016128	F007163	AGGA	MTLEDLQHIFEYQIDEGTENLYFMLTDGDRHPLIQRHPSDDLAGLLPMLDSFQYTGHNVMPRFKK*
JGI25908J49247_1000016129	F095464	AGG	MTPREQSFCYLKQYILAQRETPWIAKMNAVEDRARCALQHLGGMAGDWYPYRPHECHYYYPQRKQE*
JGI25908J49247_1000016130	F002268	AGG	MSRSYTNMSGTPADKGPGITGFIEIFEGRLNKMKLHLKAELSKDKHDRNRKWIKIQLSDARKLNKTLKEMRSVTTKLCPHCGEKL*
JGI25908J49247_1000016137	F011276	N/A	MIKGLMGTGGVTVSGGDTSLPYINPNLSNPIQGMLRINNTNVEVFNGTSWQTLPSSYATVTLDQDIQDIIQWARTQRQLELNRATLIANNPALEIAYRAVLRAEQNFDTLSKFVEYDKEIHNV*
JGI25908J49247_1000016138	F075746	GGAGG	MTIFIPVLIICLNGNCEFMQAQTYYKTEEQCRTSMEMQKQHMRTLIKQADKGDATVLEGTCIDVDVKVTRGKTT*
JGI25908J49247_1000016146	F009334	GGAG	MKTTMVHDVEVKVGDNVAFKSDIEQWAKIIEIKKTYAGVALVLENKHGFSGDYIGGETITTVLARDCWAD*