Scaffold JGI25908J49247_10000101

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000101
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22757
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F082692	Metagenome / Metatranscriptome	113	Y
F084221	Metagenome / Metatranscriptome	112	N
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000010112	F084221	N/A	MSNNQQQIAEGVTGTVSSILLSVPAWMLDVEFALKIFCLILSAAASIFTIYKMRKKR*
JGI25908J49247_1000010113	F047677	N/A	MKWLKSIFSNEGDASSKRVASILALIVCINLSYIGTFTEYKTPEYMFDGLLILAGGGLGLTVIESIFDKKKSNDTRSQESN*
JGI25908J49247_1000010114	F077297	N/A	MTQEAKNQIKAAAVMVVALTICITIQCLYIALKNSKKALEGYERRAERATHVIDSLEATNVQRMQEIAQLNVQIENNNKRYEANISAIDSLDRNGLKRAMHNLLSSLTSERYAGQSND*
JGI25908J49247_1000010118	F066778	AGCAG	MRAGAHTFKTILMSYTREPNWDKLKPTIDWDEQEEKLADKLSKYINKNNTVMKQGIVKSQKFVRDWNGPSGTIYYFDLVVESNNGLNEVGQIGVKDMKSPKIAVGATIHYTSEERTGPTGKKSTNFKMQNPMQYSGTAAAPSGAVNSGSNYRKESPDVQNSISKSVALNNAVLFCKDVKGSKPGDVLDTAEIFLAWLKGEEVEAVQIKAVTNESADDEMPF*
JGI25908J49247_100001012	F082692	N/A	MTNPQNDIILSMTLLRSGVQGKSQEFKQASGSYYAKRKVWQIRAINYTILIGLLSLITFTIYSVI*
JGI25908J49247_1000010123	F072341	N/A	MSKELAASVQQSFNRSLSAEERAIAECISSPKLHTLNEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQNTYRTTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALILPEAEIKRPEPTDPVNVLYADVDRWNQRKEIWVEISAPYNCQRLFKSGIYKKSMWAPEVWARFEDIAKQKVEAKFKASNKVILGESAQAEFDGLQKIELSRLIYIDIIKQINKEKE*
JGI25908J49247_1000010126	F093876	N/A	MNLFRKKKEPIDLNAKLLPELCSCTIIQWNYSEDIGLESTYAEDIPFMFDARQCVGIQAEVEFRKDGTYYVGERTLALMQGIDNAIIIDVPYNQFKKNFQELKSNIITNDYIISRG*