Scaffold JGI25908J49247_10000059

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000059
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28147
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006586	Metagenome	369	Y
F008185	Metagenome / Metatranscriptome	337	Y
F032650	Metagenome / Metatranscriptome	179	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000005910	F008185	AGGA	MPTLFRHAVTTSVGITPVDVLQIQEGVRATVIGCNIANVTDYDTVVVNMYVVDENSTQATYVRGIIIAPNTTAKIITQGEKLILPATSGIRIETDTEDSVDVVISYVEIS*
JGI25908J49247_100000592	F006586	N/A	MKVESDKDFKQLREQFSVWRHRFPMFVHDVQRIEKIINLHVTAHSKIMVMYRQTKNRSYLEKAQQEIDTINVVISTVEKLELMVLLSKG*
JGI25908J49247_100000596	F032650	GAG	MIRNYENPEGTLSLIDSSSVTVPVKVFTSSTTGAPIAGGVTGRENAVTTIALCNTAAPDPADETTNSVTVNIYVVRSGLSYGPGNLVVNSLVVPAGETVFFSEERIVTASGDAIWVGTSTAARLAVTVSVLAV*