Scaffold JGI25908J49247_10000030

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000030
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34572
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007742	Metagenome	345	Y
F085598	Metagenome	111	N
F086807	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000003029	F007742	GGAGG	MTYYTHKAQAQALADELAMQERDAWSYQVHGSPRGFYVAVFDDDNHFLGIL*
JGI25908J49247_1000003040	F085598	GGAGG	MSVRLNNWKTQLKAEKSIQKIYQRDFNAAWRKLSKSMTLVKKLEDKVATHLAKIK*
JGI25908J49247_1000003051	F086807	AGG	MTHRIVVNCETGVVSQVEYTAEEQAAHDAAVAQQALAEAAAVVVTPTEPVA*