Scaffold JGI25908J49247_10000007

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000007
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68979
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (75.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009332	Metagenome / Metatranscriptome	319	Y
F011221	Metagenome / Metatranscriptome	293	Y
F048989	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000000721	F009332	N/A	MFKWLIFGIILSGAVFAQSVTMQKSVECTDTETLFRGLIGSDYKEKPIWLGIESGDKVSKYTLFVNEETKSWTLIQFNEKIACVLGTGENSTPLFNGPKI*
JGI25908J49247_1000000725	F048989	GAG	MKNDLKEFEGVHVPSIKDFWSWVGKAFTPSYQKEIDMYLKDSVDHKDLETRMTILMRRGLL*
JGI25908J49247_1000000727	F011221	AGGAG	MFYANMAIDSIQDAKINFLKQTVKEESLRKPLVDFVEAQRVFTKQVAKTSTDVMNIASETVANTISGIANKKGE*