Scaffold JGI26114J46594_1000056

Overview

Basic Information

• Taxon OID: 3300003271
• Scaffold ID: JGI26114J46594_1000056
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30812
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017135	Metagenome	242	N
F022785	Metagenome / Metatranscriptome	213	N
F030110	Metagenome / Metatranscriptome	186	N
F072361	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26114J46594_100005616	F030110	GAG	MGVRGQDRASSQLTVVNPIRMAGIGYSVAKTRAQLNRETRQAEMRKKIEASGYETHVHEVVKKLLDPEQELDSIDVQRMKSAADLSIKMMAKFMPDLKSTEITGPDGGGLVVNIQRKRFDGDD*
JGI26114J46594_100005623	F017135	GAG	MIQIISCPLPGGGRALLKTSDIGGATTAKNPQECDVYVLGWAQEGITIDLSVEEFAEVWVSALLDEGETQEYEIVFTSDDLH*
JGI26114J46594_100005630	F072361	GGAGG	MLDLSKSDEAFLSDRFKDYLTVASRDFRHGFEDGVACNDQAYPATDTYLSGYADGYALTQMRQASQHAGETL*
JGI26114J46594_100005634	F022785	N/A	MSVEQSVAKLEAQQEAMAQDVSEMKSALTSIAQTLRDLSSMEQRQIYLAETVARAHKRIDEIQAIVKDEVKNHEKRIQAIEISIAKNXWIERIIMAALMTGIGIWIKGGV*