Scaffold JGI26115J46592_1000056

Overview

Basic Information

• Taxon OID: 3300003268
• Scaffold ID: JGI26115J46592_1000056
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28286
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (23.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007366	Metagenome	352	N
F023580	Metagenome	209	N
F026567	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26115J46592_100005613	F007366	N/A	MRGTPLKETKLGKWFKEKSPKVFSLIAEVVPGADVLHTISALIDSTDTSAEEKVKARMMMSEFANADRANARNREIEITKTLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVQDKEIFFHILGFAEGTLVGQVVNYYFGASKK*
JGI26115J46592_100005620	F023580	AGG	MNNIKLFLIRNYGSTFNAAQTLDVTPNTVRNWCGRMPRNILKHLPEISESCGATYAEIVEEVLLCEREGIE*
JGI26115J46592_100005636	F026567	N/A	MKAIKILFLVVLAIVAIPVGIVYSVGESLFFIASDVLRSIWRAIYDFFRDVSIIVSVTASKFLNRLLMDSGVPFGNHSVSAVLGANQRERTLTGLGLWLTLLLDSIEKNHCRKASERAGI