Scaffold JGI26115J46592_1000033

Overview

Basic Information

• Taxon OID: 3300003268
• Scaffold ID: JGI26115J46592_1000033
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35195
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (23.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008497	Metagenome / Metatranscriptome	332	Y
F029110	Metagenome / Metatranscriptome	189	N
F033812	Metagenome / Metatranscriptome	176	N
F039582	Metagenome	163	N
F048321	Metagenome	148	N
F087212	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26115J46592_100003314	F087212	AGG	MPLNQELAKYYPKLLKLAEKITKGNKVDALDLVQDLYVIILEYDQEKIKKIVENGHLVFWSARVLMNQYVRTNSAFKTKYYTKLRTENYDVKNFQYFDGIEELVEFENKLQFVKDKMNNLHEYDKLLFEIYFSSGKSIRKLAKDTGISTTSIYTTLKNVKQYLKDEVESEYKEFER*
JGI26115J46592_100003335	F008497	N/A	MRGNVYLSLDTKTFEGLIPEELMKTYGIPQYDEEGVQNGVIKPTFKELGEYNRRKFGANPMVKIGKAKFHIIELEASWVSGELSALLDLGKGKEYPNNCLMTRTEAAQFIRDNSDDSII*
JGI26115J46592_100003337	F048321	N/A	MEHWLQSVAINKLSLNIYNQCVDAEGNYFLIGVIDDQTRVATYGVISPVARSQRAIKFNVPTNAAPFNALKTNSFYNVVVYEQTNDTNTSPTDAVVLGLRWEGTMIIDADSEVTFTEYANPTARNYVYYNTED*
JGI26115J46592_100003345	F039582	N/A	MKVQVDTSDKTTVYTGGEYPVGHITQVVKQYVMKQELADNLLKNMKARIKELENEQGNGDLVYELKMQLHKVGAWYEPESVWADDYTGIPEVDMQLRHAPCEKLGSRSL*
JGI26115J46592_100003355	F033812	N/A	MEIGKQPTEQLLDFCFKTLNKALFEMSQNKAESDRKVLANILMNDLNDKFFRLTAADVTQAFHKGVREGEQLAINPRTWFNWLNKQKMKTNKLRIEQSQDGERLLIESNAQNIDKEEVLKEFLELCVIEPFEEHCKDEEFTFQGINQAFQWLELNNFIVLTTKDKEQMWEEVQEEIVARKKFVHNKRKQFHPVIMCREKALRMHFGKWKKAKKNLRKEIYKILDNG*
JGI26115J46592_100003356	F029110	N/A	MDKRISELLKQNAANVANSGTGSRKDIGGEKEVAKAWKEIQKDIKKIDKEFYEIIKER*