Scaffold soilL1_10067406

Overview

Basic Information

• Taxon OID: 3300003267
• Scaffold ID: soilL1_10067406
• Source Dataset Name: Sugarcane bulk soil Sample L1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4345
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010872	Metagenome / Metatranscriptome	298	Y
F033479	Metagenome / Metatranscriptome	177	Y
F054961	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
soilL1_100674063	F010872	AGGAG	VQRHDRLRVFLLSCVVLSGMPSTAAAQWDPFNPPKDPKHVDVSGTAGFRLSTDWSDLILLGSVSPATGALEQVLGRDLIFRPGPVYDATVMYWEGRYGFRAHGGFSRKCLAIAGRCGAIPTLTGPTRGSVDVDSASYDVGGAIGLIEYHENPWVWPYVFFGFGGVTYNIKQNISPPLQMFIERRPPGNPDITVTKVGGREQSLLIAIDELGIETKFALNFGIGTDLRIPLGAAGVGLRLELSDNMHESPLNIQVAELNTFTDDIVRANGGLVHNLRASAGLVLHFGR*
soilL1_100674064	F054961	GGA	MRRHLHAFLVAIILCIMIVGDGAIAQIPEHRFAPGTPPITVRPSALAQVVSELAGSPVNVQRARILWVVDAHAVVIESDSVFDPTWRDRDRVLVLLERNRSLSIPRQPVAIAPINVVGIARTLLGIQAAQDVPWPQALTRREIERLRVRAAILASSVRTSDGVELTSSAPAP*
soilL1_100674065	F033479	AGG	MTRWTAVLPVIALTGCATTSSSLVRGMTAPNPSGCYIQVFDGERLRGVADFINGPMRYGTLSRLPNGADWNGRIRSIDVGPAATVTIWTGPNQSGKSMSLRLDQPYPMLPDDFRGKVRSMDLRCEESRLASEHEPSSSPVTK*