NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilL1_10043086

Scaffold soilL1_10043086


Overview

Basic Information
Taxon OID3300003267 Open in IMG/M
Scaffold IDsoilL1_10043086 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample L1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5927
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002646Metagenome540Y
F006283Metagenome / Metatranscriptome377Y
F027641Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
soilL1_100430863F002646AGGTGGMRLRNRAARNRDIALTTLIDLLVQVVFVFTLILIAVDVVDGDPQKQGWVTPDAWKTLISIFDVDPQTIREPGAQLGEIAGKYDRLKHDLLACDGKAAACEKQAGRGPGNGPCRDERGVEMIVAEATIDQXXXXXXXXXPLSVEQFGALFRPWREHGLARQPACAFKAEVRYDPRAPAGAYEPARRAIASYFSLSAPPRRF*
soilL1_100430868F027641N/APGYGELDRELKRRRAMYEAAKAEYCAEIDRVFEKTLKEQAHLLSDVKSNIEYYQQLASRTDEQRRTFIREAAEIQDACNVVLKGYRQTNLRVRVSPAPVYFNDVVVFDDRLVKPPAGMSETEEWLSRSYENAMKEFSDLARQNDTTVQNLRTAEIRRRDYYFSKLERDIREKLVREEWEAKS*
soilL1_100430869F006283AGGAGMPQLIDRARRTLQVDQKAADAGVGDNPKTVSTSLDGNESEICAYFTGLVRRRRETCEAALARLQLDRKGTAAKIDIQQTRDSFARLLTGMEPVLEKLKSERSTALYQAKENEGRALKHLRWFQQKHGLHYRAATYPESHVYHFATVAALAVVEWISLSTFYAEGSDFGLLGGVVIAMALSLVNISLAVLAGGLLRYVNHQSTRRRRLALTAAACL
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