Scaffold soilL1_10011510

Overview

Basic Information

• Taxon OID: 3300003267
• Scaffold ID: soilL1_10011510
• Source Dataset Name: Sugarcane bulk soil Sample L1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5662
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031921	Metagenome / Metatranscriptome	181	Y
F039206	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
soilL1_100115102	F031921	GGAG	MQTAALNHHPSLPEAGVPGVSVPEGPLSAVALRRWLHGRWALLFSHPDDFAAYGFESDRWLVHVEEAFAATDIRPLALAGRHETGWVTAVGGYTTSLALDEIQRYPVARASREEALRNAAFEPATRFVMTLDSGLRLRRTFVYTQQDRLPSPMDLAVIAQGLRDGVKNRHAAVRNTPAIPCRR*
soilL1_100115106	F039206	AGG	MNLAQTQPRQRRGVRAVLLAALLGASAHALAIDAAPTGINVVIIDETQRGWDKGILNRYGIASRASRINRGAHAEALRQALGDQNVRTRLAVPTGCPRASTRDACASVRLIKDLDLPDVVDETKGSTLLVLWPEAAYFPQQQFYLAYIDVDVLQKGKVVPGPFYVGYRDWKCGNDCVQAAFEASAKELAAMVRYVLELGPAAQTLAVPAPWQSKPLVTSVSKWANKCATDANHHRVVREYGERLWLNDPSERTLLSVAWRGCNIFEPS*