Scaffold soilL1

Basic Information
Taxon OID	3300003267 Open in IMG/M
Scaffold ID	soilL1_10004088 Open in IMG/M
Source Dataset Name	Sugarcane bulk soil Sample L1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003267 Open in IMG/M

Scaffold ID

soilL1_10004088 Open in IMG/M

Source Dataset Name

Sugarcane bulk soil Sample L1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37661
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (69.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

37661

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (69.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location Name	Ayr, Queensland Australia
Coordinates	Lat. (^o)	-19.733298	Long. (^o)	147.17873	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Ayr, Queensland Australia

Coordinates

Lat. (^o)

-19.733298

Long. (^o)

147.17873

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023084	Metagenome / Metatranscriptome	211	Y
F028764	Metagenome / Metatranscriptome	190	Y
F066681	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
soilL1_1000408819	F028764	N/A	PSVVSLAGNKLPPIPRAPRLRAKSLNEAMIPGPTKPTNGSTLDALVARYEAARDSVESRLETGMRVARLARLFSPSRLSPNGGVTDTRISLAGVANFIRVYHRQQAMVERAYEDTVTTLAREQGWSPKRVRAWYSRAGRREAPNLELLSNSLLSSIDSVLGVLDAQAGAYKIRGTAIAFEDPRAGQTYGALRRRIDQQIDAAIAAGAATSPGPAGLLLQAIGTSTLPRET*
soilL1_1000408840	F066681	GAGG	MLRVLLVTAMAVFAWAWETDGDPLPPRIDSSRVELTTLGREYSDLQQWAVAISAATDTLSEGSSERARALADQLVRLMTPLEDDFARTTASLSTDQLELVLPLWERMAFAHAGFEMLKDEARALGEDSSLDPAELRDLVAQLSAVLDFATEIQQMVLDQLTTPPDTPFPVT*
soilL1_1000408844	F023084	GGTGG	MNQPLCRLSLALVPSAYVALSLQGCSVPTSTVDLTPGPEPVQFTVNPSVIQAGGSAEVQVVSPSADSIALSSPNGLDRYWTTGSNLRARVGSDFGDGESGQQFAVRQNGHLFNVRKKPMIVSVCRQGNCREYYHELAVKLPERNERSVAVTGGWSTAFTRRAVTSRDKSVLLKEAINHTLWNVQAEVATGKLSGRLQGFYGSDVQGGSLDLAHEIKRSGEGLAYGIAMHVGAMHTSWLPIERNAVLSRGTAYRASVGPSIMLKGLTASSQLGIYTDGKETLQEVSTFVSLNGGLTEVRSPVTVTLEKTFAFGGEPMIPRRQDQLERLTLGLDLVRNFALRVGMTTHRSAWPTADQATDLRASEIYYTIGGQYTISW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold soilL1_10004088

Overview

Ecosystem & Geography

Associated Families

Sequences