Basic Information | |
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Taxon OID | 3300003267 Open in IMG/M |
Scaffold ID | soilL1_10002287 Open in IMG/M |
Source Dataset Name | Sugarcane bulk soil Sample L1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34564 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (61.90%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia |
Source Dataset Sampling Location | ||||||||
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Location Name | Ayr, Queensland Australia | |||||||
Coordinates | Lat. (o) | -19.733298 | Long. (o) | 147.17873 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F033947 | Metagenome | 176 | Y |
F035463 | Metagenome | 172 | Y |
Protein ID | Family | RBS | Sequence |
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soilL1_1000228711 | F033947 | GAGG | MKFRLYLLMLLLSIAGATLTYAQGEKKPRTIADYRPRMLRELNTLLPEVFRAALAERGVEGNKDMKQIVHGELFPSRVKVVYSGTQRPLLEDKRNVIIGWANQFAGAPEFYTKPYQTELLFTEGDEKYWLAVHKDLLDHDWKRGDALELCVIKMGNVRIGTEFEPVLLVEQEIRE* |
soilL1_1000228734 | F035463 | AGGAG | MSKPATTVDLAAFKKQLADSLERSAKSAGQTIVKETLTCEIANGLQVVTAAIRRDELPTEKEITAGVDLLYAYVSINGQRAVPAGFYRIRLALPGYDKKGDVKVSFIDAKGKIVHSLMGTGRPRSPRPGTDDAVFRRLRIEVDVCGRKRCFHIERNGFLDWEWGCTDLDGNSINC* |
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