NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilL1_10001522

Scaffold soilL1_10001522


Overview

Basic Information
Taxon OID3300003267 Open in IMG/M
Scaffold IDsoilL1_10001522 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample L1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11679
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020992Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
soilL1_100015228F020992AGGAGMKSIAGALLAALLLVSLALPSLTRASADGPSASGSFQFSLDDGKIRNLEFNARNQNNGRTVGEMTFSDQAAVPVPDPDDSTAINTPGAVMTAKFDCLQIKGNRAVMSGVISQSNIAAAIGLRVLLVVEDNGEGVNIPTPDKLTWGVYQSANANWTPKDAERDDDNGASLTWIAKDAERDDDPGVPSNQSKTIGCQSFPLSSYSFVDIKHGGGNVQVQP*

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