NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26119J46589_1017585

Scaffold JGI26119J46589_1017585


Overview

Basic Information
Taxon OID3300003264 Open in IMG/M
Scaffold IDJGI26119J46589_1017585 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)845
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061768Metagenome / Metatranscriptome131N
F093904Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
JGI26119J46589_10175852F093904AGGAGMSNTTNHEIMADILSMADKDIWNVIFAIEKEFGIAEVPSPTGGANGFIAKLFELRKEARSI*
JGI26119J46589_10175853F061768GAGGMLDTSYIDVGYDTCKYTVDGITTTAIIKEVTDGYLSVKPISKMGKNVYETNLDTTFVGETFSSDCYDAIDLEIWMDGRGCDNSAIGVSGCYEPYTRLVA*

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