Scaffold JGI26117J46588_1000114

Overview

Basic Information

• Taxon OID: 3300003263
• Scaffold ID: JGI26117J46588_1000114
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_48_BLW_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17057
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027807	Metagenome / Metatranscriptome	193	Y
F034404	Metagenome	175	N
F040054	Metagenome	162	N
F048234	Metagenome	148	N
F066271	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26117J46588_100011411	F048234	GGAG	MQIAIQISKQVDDWDKWVDELEQIDSTASADDYDAEAKVVTLLVDKKSIDDYYHPVGGRYPVEFEGRTEFVEEIGICVHSCKWQDHNIINAEEVCAKLEGLDYVN*
JGI26117J46588_100011412	F027807	AGAAGG	MSIKFVEPKPIKAELIQELDSLVGQLHNLSIRKPMPFHVQEAAMEARMADFLELSEQDFIRGWTDCEEGIEHREGKSEAYNAGYADCYEYENKGGQ*
JGI26117J46588_100011422	F040054	AGG	MITLPILSMPLPDGGSVVCRVEAIIGATSNMRNEDLTDVYVEVMCPEGITIDVDIDSFTQSWLAALITPMSEMREDHGMH*
JGI26117J46588_100011424	F066271	GAGG	MCVQSQRQFFAERHHIVVTDKTAELLARLGRDKGIGEEEYLKRLLRHPNEDHFIAEIARHYG*
JGI26117J46588_100011428	F034404	GGGGG	MLQTVTIDWHPVEQGSMPRNEGSYLVAFDDGAVETYPMSDQDIKRGEVRDGQTHGLLWAAGIPSPXDDGED*