Scaffold JGI26343J46809_1001486

Overview

Basic Information

• Taxon OID: 3300003223
• Scaffold ID: JGI26343J46809_1001486
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1632
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026108	Metagenome / Metatranscriptome	199	Y
F044033	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26343J46809_10014861	F026108	N/A	LQAGFLYKRYQAQKDNPDLAALLDQVRITPGGDRVTLHMSLNDDQMSSLIKHNTFSFKM*
JGI26343J46809_10014862	F044033	GGA	MFHSRAITVSVDFRRIELQIDPDARLAAAPGGAARFLAEAAGLTSEEAAELQKSVVAACQETFEHLIGDHPHLTVTLVRYPDRIEVELTHEGGARPAVGLDRIAGFATQIGVSGGIGGVDRVQYEVRGALSVTRLTKYLGHLPPIQ*