Basic Information | |
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Taxon OID | 3300003219 Open in IMG/M |
Scaffold ID | JGI26341J46601_10006043 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3973 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003434 | Metagenome / Metatranscriptome | 487 | Y |
F090799 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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JGI26341J46601_100060433 | F090799 | N/A | MKISLFLAFLLTVASAFAADAMKFVSPDKSTTLVVDKSGRRDIIELQSEKRVHRLFYDDLDSIFKPKIAEAFNASLNKVGNRPPTTFGLGARIPCS* |
JGI26341J46601_100060435 | F003434 | AGG | MDNQIPEDPYRRLARERSHEDARQTVATNRMLVQNLVIINGGAAIAVLATYGAHNGSGPGKSAALLTIILYCFGVFTAIFAGLYVRRTTQEWSSFWELKSYPDMAEREKVMEGHRRQATRSKRWSTGLLVFSEVFFLAASLCLAMSLP* |
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