NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26341J46601_10001787

Scaffold JGI26341J46601_10001787


Overview

Basic Information
Taxon OID3300003219 Open in IMG/M
Scaffold IDJGI26341J46601_10001787 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7034
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029541Metagenome / Metatranscriptome188Y
F040823Metagenome / Metatranscriptome161N
F044089Metagenome / Metatranscriptome155Y
F068065Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
JGI26341J46601_1000178713F040823GAGMSDTTKSLRPLVNRAPCWESEHEAIITFFTDDGDVWGFPFFGLLAAQYTARNHTLALQWQGAQVRIQGPRALDFYTAFAKGSATGIKSNGADILSVQLIQPPSPSPAAAA*
JGI26341J46601_100017872F044089N/AMNYIKQLQADKAEAIESARTIETELNDLISYLCCDKFRVDTRVQVGDVLRTLLPIRNNVTYLATNLSRPTCSSKNI*
JGI26341J46601_100017878F029541GAGMRHVACLKQQMNYASPDPKQKRERFKELSKNPKVKTGKVFAADVRRSKIHPTVRKLTAWRQQNKLSQTKAVAVLGKYYFHITFASLRSWEEGRRSPHPHTSAILEKFLNDHPTVPPPK*
JGI26341J46601_100017879F068065N/AMSQPTSIQMLDAAIWKELAAEEVAQSEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVANPERFL*
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