Scaffold JGI26341J46601_10000650

Overview

Basic Information

• Taxon OID: 3300003219
• Scaffold ID: JGI26341J46601_10000650
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10790
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004826	Metagenome / Metatranscriptome	422	Y
F005896	Metagenome / Metatranscriptome	387	Y
F039273	Metagenome / Metatranscriptome	164	Y
F041388	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26341J46601_1000065013	F039273	N/A	MLENLGLGERLKGRKDLRGKKVIFVDDGSNTYRTMCFTIAAKLVKKRGAXVETVAPAPGETAHAKVVEVEMRPKPRVQRPINRR*
JGI26341J46601_100006504	F005896	N/A	MSLSLKELQDVLDELKASRASRQRAWENLQEIRWVLKDTAGIELPPPKRKTIDLQGRIVKDGVRSAVKDRQFALGELVKAIREFRKFADQPLTLRGGDHAHAVEELNKAVDRANGLLQ*
JGI26341J46601_100006506	F004826	N/A	MRPTYSLLFAFSLTILPALHAEKIDNRNFAIDTCFPTQNEIQLAEGRARSYCAKHASCFGAEPRFLAVDTSKLFPGEIQDLYPKLIDSETTASFLGRGDHKGSYSELDLHGIMIYDTKTGHFVSNEGYVSVDTPPRGGVARFGSYIARYIGWG*
JGI26341J46601_100006507	F041388	GAG	MNEQEIETRFEELKNELKAQKEQLDALKEDLKILLKHRSIAPRDIVDTAQQIGNAAFDQSDVHRCREFLKKYDVRKGL*