Scaffold JGI26341J46601_10000188

Overview

Basic Information

• Taxon OID: 3300003219
• Scaffold ID: JGI26341J46601_10000188
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19015
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F001709	Metagenome / Metatranscriptome	648	Y
F017346	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26341J46601_1000018819	F001709	GGA	MPQEVSVSYQAIKSKVYRLIDTLVVGEKSEVEVQESIRRWWELIHPADRPIAQKYLLLVLGRSCQALDAIEEGLTDATNHDAFRPDPAKAFKLVERVVKQTSKSAVFSSSM*
JGI26341J46601_1000018820	F000249	GGAGG	MKALTWVLLFPLVICVLSQAQRSPSPTATQDSGISSSAPDERMFFPRDMFWGWAQLDLAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGQLRRFMVFGAPSFLFGKTIPKTLYTWSPDAIGIEHSWGVGIFIAKGFEFRVTQHFLFDRLGARDTYLGVADLGNNGPWGRYATVGVRKSFGTRRW*
JGI26341J46601_100001886	F017346	N/A	MGIFDSFRKEEVPGTKVLVGQLLPKFDEHFKSDLRVYKRFYPAAGGATFMSVAELRGAASHNYDILHLFCDVDASGVITDASGDRITGTELLKAAVDSGVKLLWIGNDNPQEAYDAGFKTKGMKINVVLTLRRLGSNTSLFLDSLLAKMQAGETFAKAWSVASQPEGKSVQPDVPHTISSLGRGSVVLK*