Basic Information | |
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Taxon OID | 3300003219 Open in IMG/M |
Scaffold ID | JGI26341J46601_10000006 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 59829 |
Total Scaffold Genes | 69 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 50 (72.46%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019283 | Metagenome / Metatranscriptome | 230 | Y |
F032210 | Metagenome / Metatranscriptome | 180 | Y |
F054494 | Metagenome | 139 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI26341J46601_1000000635 | F019283 | N/A | MWNLTSYDINRIKGQLQARKARIDAKYAEETKALDADFADLETLERVAAAFAHKFKADEPVDAPAESSETTAEQSPQVETEAAPEEQLAATSGEANGPDTKLGSRWRLALRDRPVVSDAE |
JGI26341J46601_1000000637 | F054494 | GGA | VPIPVLLVGFKSTGIALTGVKNPVRPPPLVERAGPPPVDEAATSGELGGRSETPPTASDNGSEPAQTKDRRGSTSGQGDGIDLIIDKLPRHALVKPIPVTISPLGDRVFIASTPDLDITVTGNSLSDALLLLKQQLESTYESLRNKASGREEERQLKRLRDYIRDH* |
JGI26341J46601_1000000641 | F032210 | GGA | MEEKNEMWGQKQEGEDRSTVRSDGGGNGALLSSKEATEAIERLRSGIDQASRAVRDLTQVGDHWVRGLPERARDMAKELRNQGDRAIGSVSQQVEHNPLASLAVAFAAGFVCASLIRR* |
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