Scaffold JGI26341J46601_10000006

Overview

Basic Information

• Taxon OID: 3300003219
• Scaffold ID: JGI26341J46601_10000006
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59829
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (72.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019283	Metagenome / Metatranscriptome	230	Y
F032210	Metagenome / Metatranscriptome	180	Y
F054494	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26341J46601_1000000635	F019283	N/A	MWNLTSYDINRIKGQLQARKARIDAKYAEETKALDADFADLETLERVAAAFAHKFKADEPVDAPAESSETTAEQSPQVETEAAPEEQLAATSGEANGPDTKLGSRWRLALRDRPVVSDAE
JGI26341J46601_1000000637	F054494	GGA	VPIPVLLVGFKSTGIALTGVKNPVRPPPLVERAGPPPVDEAATSGELGGRSETPPTASDNGSEPAQTKDRRGSTSGQGDGIDLIIDKLPRHALVKPIPVTISPLGDRVFIASTPDLDITVTGNSLSDALLLLKQQLESTYESLRNKASGREEERQLKRLRDYIRDH*
JGI26341J46601_1000000641	F032210	GGA	MEEKNEMWGQKQEGEDRSTVRSDGGGNGALLSSKEATEAIERLRSGIDQASRAVRDLTQVGDHWVRGLPERARDMAKELRNQGDRAIGSVSQQVEHNPLASLAVAFAAGFVCASLIRR*