Scaffold JGI26339J46600_10002124

Overview

Basic Information

• Taxon OID: 3300003218
• Scaffold ID: JGI26339J46600_10002124
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6089
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26339J46600_100021242	F070426	GGAGG	MILELIVATEASALSASWIRRSRMRRQQTLMCGSTAEINLPFLDQYLRQQTPHPTRLQTFAAQKLAGVCRHVVHTRAFELMVLKLIQSASRRYRRESEISKVKVIL*
JGI26339J46600_100021243	F045709	AGG	VNLTPSQKGSFLAGVGLWLLIWASLWKADDIAGAMRIQRWFNSTRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLLLPCLEKLLRQRGTLNATLP*
JGI26339J46600_100021244	F014894	AGGA	MRMSIGIPGFSIYFEHHQVKPFIKDHSRKAKDLFNERVVPSVLRGTCKGLEVVANNTADAHDYLIGKLKTKQSA*