Scaffold JGI26339J46600_10001853

Overview

Basic Information

• Taxon OID: 3300003218
• Scaffold ID: JGI26339J46600_10001853
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6548
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014825	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26339J46600_100018532	F014825	GGAGG	MAGNKLTIKLTDDQQHQIKTATGKSIKELNIDLAATGHLTDKDLADVAGGSGRVILKDTIPP*
JGI26339J46600_100018533	F014825	AGGAG	MAGTKLTIKLTDDQQNQIRNATGRKITELNIDAAAISHLTEKELDQVAGGAGEIVITKDPG*
JGI26339J46600_100018534	F014825	AGGAGG	MAGSKLTIKLTDDQQKQIKNATGRSIKELSIDLSVVEQLADQDLAKASGGIHHEGM*
JGI26339J46600_100018535	F014825	AGGAGG	MAGNKVTIRLTDDQQSQIKNARGRSITELNIDVAATGQLSDKDLDQAAGGVIIEFGKI*
JGI26339J46600_100018537	F014825	AGTAGG	MAGNKLTVKLADDQQNQIKTATGKSIKELNIDLAATDHLSEIEFDNVSGGINFIKADKG*