Scaffold JGI26079J46598_1017465

Overview

Basic Information

• Taxon OID: 3300003216
• Scaffold ID: JGI26079J46598_1017465
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1927
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020899	Metagenome	221	N
F030730	Metagenome / Metatranscriptome	184	Y
F048329	Metagenome / Metatranscriptome	148	Y
F051961	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26079J46598_10174652	F020899	N/A	MRKYIVLILFVILSCQPEELMIXEPLPQYEMIFEESESSVTDGQEFSFEVVSEEEHQLVISKDGSVIAKESFLPTLELNTRKIYTKSLPKDLLQLELINSNGVIKNTFIQIY*
JGI26079J46598_10174653	F051961	N/A	MSAKLKPSSKEYSKVNNKLTNKFVIKHYTASNTSTDELIKMYENSTYKKKRGIIQKELIKRGKWENLKKK*
JGI26079J46598_10174654	F030730	N/A	MGKLKEKIIEKGSGLVAKSKTKKQLEKVLPKPLAKQISKKVGKGVESITSKAIDLWNRFNK*
JGI26079J46598_10174655	F048329	N/A	MFVFTEENIGNIKNAVYTKDGVSKKHAKKIDEIKDGMFAGFNYSKYKVKTPPKNTSMTVYNELQYLHDLPEDLQYVKE