Scaffold JGI26079J46598_1014136

Overview

Basic Information

• Taxon OID: 3300003216
• Scaffold ID: JGI26079J46598_1014136
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2261
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26079J46598_10141363	F003188	N/A	MIDPKKKLRQVLFSIHPLSYRIKXTEPDKDTMDKKLFIEVMKQLKQIEERRDFMAEEIGMDMTAYEDQFFGVIENLMKMHFNKEQLALIQMYLYQLVPDKDWNGTITIEKGKEEVEVPFKQPEDVWNVVNSFTN*
JGI26079J46598_10141364	F001222	N/A	MKKLENLVKLVTEAAKINFAGQSFLLKVDTNEDPQKKGVKVQFIPTEFGALTPTQQNDIAIELEGRLEQGLGEYDLRVERDRQLKDKTIIGFFIYIEYFDKLVRKALSGQNPNSTVEPEEPAI*
JGI26079J46598_10141365	F020020	N/A	MKKYLIEFTHLNGEKEIVELTTDRLQWSIDQWKRNRSVVKHEVIEEGSSNSKQMLFG*