Scaffold JGI26079J46598_1012076

Overview

Basic Information

• Taxon OID: 3300003216
• Scaffold ID: JGI26079J46598_1012076
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2520
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F050682	Metagenome / Metatranscriptome	145	N
F064106	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26079J46598_10120764	F001588	AGGAG	MQNTNYVFLNAADAAIVVTVNDTVVAYDVQTADALVEVFLQHNIDVLTDTIMCSSSIDFAQEEGFDTDDCAHNIIEAALEQL*
JGI26079J46598_10120765	F064106	GAGG	MQNTLTQAQALNWAAQQLQYVTNEKNEHAFCYNTQDELVVVMQQLLDSETIDFAATIANMRYSNDEVNENKYLEENY*
JGI26079J46598_10120766	F050682	GAGG	MQNTKYENTVIATIENFAALIQNAAHDSVVEKNDYSIIDNVQALQYVYANYAQHSTVASLASAALSSNLDTAVRENIHAQLTFVN*