Scaffold JGI26079J46598_1007178

Overview

Basic Information

• Taxon OID: 3300003216
• Scaffold ID: JGI26079J46598_1007178
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3611
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003188	Metagenome / Metatranscriptome	502	Y
F083269	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26079J46598_100717810	F083269	N/A	MPIKKVSVTKTSQYYIDGEGTVDRERIVTLSENWTERDITLFKKLAKQGGTCRLQGLKYTIIPGEKITTSKGWADAGAAPMPG
JGI26079J46598_10071782	F003188	AGTAG	MIEPRKKVRQVLFSIHPLSYRIKEKSPSNEVMNKKIFIEVLEELKLIEERRDFMEAEIGMDMTQYEDQFFSVIENLFKLAFNKHQLGLIQLYLYQLVPDKEWDGTITIEQKNEEKDVNFKTPEDVWNVINLFNNG*